Publications

57 entries « 1 of 2 »

2023

1.

Pan, Xinya; Raaijmakers, Jos M; Carrión, Víctor J

Importance of Bacteroidetes in host–microbe interactions and ecosystem functioning Journal Article

In: Trends in Microbiology, 2023.

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2.

Li, Xiaogang; Chen, Dele; Carrión, Víctor J; Revillini, Daniel; Yin, Shan; Dong, Yuanhua; Zhang, Taolin; Wang, Xingxiang; Delgado-Baquerizo, Manuel

Acidification suppresses the natural capacity of soil microbiome to fight pathogenic Fusarium infections Journal Article

In: Nature Communications, vol. 14, no. 1, pp. 5090, 2023.

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3.

Mendes, Lucas William; Raaijmakers, Jos M; Hollander, Mattias; Sepo, Edis; Expósito, Ruth Gómez; Chiorato, Alisson Fernando; Mendes, Rodrigo; Tsai, Siu Mui; Carrión, Victor J

Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome Journal Article

In: Environmental Microbiome, vol. 18, no. 1, pp. 68, 2023.

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4.

Rodríguez, Rodrigo; Barra, Patricio J; Larama, Giovanni; Carrion, Víctor J; Mora, María Luz; Hale, Lauren; Duran, Paola

Microbiome engineering optimized by Antarctic microbiota to support a plant host under water deficit Journal Article

In: Frontiers in Plant Science, vol. 14, 2023.

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5.

Noordijk, Ben; Nijland, Reindert; Carrion, Victor J; Raaijmakers, Jos M; Ridder, Dick De; Lannoy, Carlos De

baseLess: lightweight detection of sequences in raw MinION data Journal Article

In: Bioinformatics Advances, vol. 3, no. 1, pp. vbad017, 2023.

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6.

Terlouw, Barbara R; Blin, Kai; Navarro-Munoz, Jorge C; Avalon, Nicole E; Chevrette, Marc G; Egbert, Susan; Lee, Sanghoon; Meijer, David; Recchia, Michael JJ; Reitz, Zachary L; others,

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters Journal Article

In: Nucleic acids research, vol. 51, no. D1, pp. D603–D610, 2023.

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7.

Li, Xiaogang; Zi, Haiyun; Carrion, Victor J; Zhu, Hongguang; Liao, Yangwenke; Sun, Shucun

Conifer and broadleaf trees show a strong co-evolution with rhizosphere diazotrophic microbiome Journal Article

In: Plant and Soil, vol. 484, no. 1-2, pp. 487–501, 2023.

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8.

Bravo, Víctor José Carrión; others,

Unlocking the secrets of plant microbiomes. Journal Article

In: 2023.

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2022

9.

Bergeijk, Doris A; Elsayed, Somayah S; Du, Chao; nez Santiago, Isabel Nu; Roseboom, Anna M; Zhang, Le; Carrión, Victor J; Spaink, Herman P; Wezel, Gilles P

The ubiquitous catechol moiety elicits siderophore and angucycline production in Streptomyces Journal Article

In: Communications Chemistry, vol. 5, no. 1, pp. 1–12, 2022.

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10.

Chen, Dele; Wang, Xingxiang; Carrión, V’ictor J; Yin, Shan; Yue, Zhengfu; Liao, Yangwenke; Dong, Yuanhua; Li, Xiaogang

Acidic amelioration of soil amendments improves soil health by impacting rhizosphere microbial assemblies Journal Article

In: Soil Biology and Biochemistry, pp. 108599, 2022.

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2021

11.

Cordovez, Viviane; Rotoni, Cristina; Dini-Andreote, Francisco; Oyserman, Ben; Carrion, Victor J; Raaijmakers, Jos M

Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome Journal Article

In: Science of the Total Environment, vol. 772, pp. 144825, 2021.

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12.

Du, Chao; Willemse, Joost; Carrion, Victor J; Erkelens, Armanda M; van Wezel, Gilles P; Dame, Remus T

The nucleoid-associated protein Gbn binds to GATC sequences and affects sporulation and antibiotic production in Streptomyces Journal Article

In: bioRxiv, 2021.

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13.

Schorn, Michelle A; Verhoeven, Stefan; Ridder, Lars; Huber, Florian; Acharya, Deepa D; Aksenov, Alexander A; Aleti, Gajender; Moghaddam, Jamshid Amiri; Aron, Allegra T; Aziz, Saefuddin; others,

A community resource for paired genomic and metabolomic data mining Journal Article

In: Nature chemical biology, vol. 17, no. 4, pp. 363–368, 2021.

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14.

Zhang, L; Ramijan, K; Carrion, VJ; van der Aart, LT; Willemse, J; van Wezel, GP; Claessen, D

An Alternative and Conserved Cell Wall Enzyme That Can Substitute for the Lipid II Synthase MurG Journal Article

In: Mbio, vol. 12, no. 2, 2021.

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15.

Du, Chao; Willemse, Joost; Erkelens, Amanda M; Carrion, Victor J; Dame, Remus T; Wezel, Gilles P

The nucleoid-associated protein Gbn binds to GATC sequences and affects sporulation and antibiotic production in Streptomyces Journal Article

In: bioRxiv, 2021.

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16.

Schorn, Michelle A; Verhoeven, Stefan; Ridder, Lars; Huber, Florian; Acharya, Deepa D; Aksenov, Alexander A; Aleti, Gajender; Moghaddam, Jamshid Amiri; Aron, Allegra T; Aziz, Saefuddin; others,

A community resource for paired genomic and metabolomic data mining Journal Article

In: Nature Chemical Biology, vol. 17, no. 4, pp. 363–368, 2021.

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17.

Zhang, L; Ramijan, K; Carrión, VJ; Aart, LT; Willemse, J; Wezel, GP; Claessen, D

An Alternative and Conserved Cell Wall Enzyme That Can Substitute for the Lipid II Synthase MurG Journal Article

In: Mbio, vol. 12, no. 2, pp. e03381–20, 2021.

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18.

Gv, Wezel; Dv, Bergeijk; Elsayed, S; Du, C; Santiago, IN; Roseboom, A; Zhang, L; Carrion, V; Spaink, H

Adrenaline-mediated activation of antibiotic production in Streptomyces highlights catechol as elicitor of specialized metabolism Journal Article

In: 2021.

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19.

Wezel, Gilles; Bergeijk, Doris; Elsayed, Somayah; Du, Chao; Santiago, Isabel Nunez; Roseboom, Anna; Zhang, Le; Carrion, Victor; Spaink, Herman

Adrenaline-mediated activation of antibiotic production in Streptomyces highlights catechol as elicitor of specialized metabolism Journal Article

In: 2021.

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20.

Sieber, Simon; Mathew, Anugraha; Jenul, Christian; Kohler, Tobias; Bär, Max; Carrión, V’ictor J; Cazorla, Francisco M; Stalder, Urs; Hsieh, Ya-Chu; Bigler, Laurent; others,

Mitigation of Pseudomonas syringae virulence by signal inactivation Journal Article

In: Science advances, vol. 7, no. 37, pp. eabg2293, 2021.

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21.

Oyserman, Ben O; Flores, Stalin Sarango; Griffioen, Thom; Wijk, Elmar; Pronk, Lotte; Lokhorst, Wouter; Nurfikari, Azkia; Stopnisek, Nejc; Kupczok, Anne; Cordovez, Viviane; others,

Disentangling the genetic basis of rhizosphere microbiome assembly in tomato Journal Article

In: bioRxiv, 2021.

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2020

22.

Contreras-Davila, Carlos A; Carrion, Victor J; Vonk, Vincent R; Buisman, Cees NJ; Strik, David PBTB

Consecutive lactate formation and chain elongation to reduce exogenous chemicals input in repeated-batch food waste fermentation Journal Article

In: Water research, vol. 169, pp. 115215, 2020.

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23.

Elsayed, Somayah S; Genta-Jouve, Gregory; Carrion, Victor J; Nibbering, Peter H; Siegler, Maxime A; Boer, Wietse De; Hankemeier, Thomas; Wezel, Gilles P Van

Atypical Spirotetronate Polyketides Identified in the Underexplored Genus Streptacidiphilus Journal Article

In: The Journal of organic chemistry, vol. 85, no. 16, pp. 10648–10657, 2020.

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24.

Song, Chunxu; Zhu, Feng; Carrion, Victor J; Cordovez, Viviane

Beyond plant microbiome composition: exploiting microbial functions and plant traits via integrated approaches Journal Article

In: Frontiers in bioengineering and biotechnology, vol. 8, pp. 896, 2020.

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25.

Sieber, Simon; Mathew, Anugraha; Jenul, Christian; Kohler, Tobias; Bar, Max; Carrion, Victor J; Cazorla, Francisco M; Stalder, Urs; Hsieh, Ya-Chu; Bigler, Laurent; others,

A Volatile Signal Controls Virulence in the Plant Pathogen Pseudomonas syringae pv. syringae and a Strategy for Infection Control in Organic Farming Journal Article

In: bioRxiv, 2020.

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26.

Zhang, Le; Ramijan, Karina; Carrion, Victor; van der Aart, Lizah; Willemse, Joost; Wezel, Gilles Van; Claessen, Dennis

A novel and conserved cell wall enzyme that can substitute for the Lipid II synthase MurG Journal Article

In: bioRxiv, 2020.

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2019

27.

Li, Xiaogang; Jousset, Alexandre; de Boer, Wietse; Carrion, Victor J; Zhang, Taolin; Wang, Xingxiang; Kuramae, Eiko E

Legacy of land use history determines reprogramming of plant physiology by soil microbiome Journal Article

In: The ISME journal, vol. 13, no. 3, pp. 738–751, 2019.

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28.

Cordovez, Viviane; Dini-Andreote, Francisco; Carrion, Victor J; Raaijmakers, Jos M

Ecology and evolution of plant microbiomes Journal Article

In: Annual review of microbiology, vol. 73, pp. 69–88, 2019.

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29.

Perez-Jaramillo, Juan E; de Hollander, Mattias; Ramirez, Camilo A; Mendes, Rodrigo; Raaijmakers, Jos M; Carrion, Victor J

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia Journal Article

In: Microbiome, vol. 7, no. 1, pp. 1–16, 2019.

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30.

Carrion, Victor J; Perez-Jaramillo, Juan; Cordovez, Viviane; Tracanna, Vittorio; Hollander, Mattias De; Ruiz-Buck, Daniel; Mendes, Lucas W; Ijcken, Wilfred FJ Van; Gomez-Exposito, Ruth; Elsayed, Somayah S; others,

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome Journal Article

In: Science, vol. 366, no. 6465, pp. 606–612, 2019.

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2018

31.

Carrion, Victor J; Cordovez, Viviane; Tyc, Olaf; Etalo, Desalegn W; de Bruijn, Irene; de Jager, Victor CL; Medema, Marnix H; Eberl, Leo; Raaijmakers, Jos M

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils Journal Article

In: The ISME journal, vol. 12, no. 9, pp. 2307–2321, 2018.

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32.

Perez-Jaramillo, Juan E; Carrion, Victor J; de Hollander, Mattias; Raaijmakers, Jos M

The wild side of plant microbiomes Journal Article

In: Microbiome, vol. 6, no. 1, pp. 1–6, 2018.

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33.

Cordovez, Viviane; Schop, Sharella; Hordijk, Kees; de Boulois, Herve Dupre; Coppens, Filip; Hanssen, Inge; Raaijmakers, Jos M; Carrion, Victor J

Priming of plant growth promotion by volatiles of root-associated Microbacterium spp. Journal Article

In: Applied and environmental microbiology, vol. 84, no. 22, 2018.

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34.

Duran, Paola; Tortella, Gonzalo; Viscardi, Sharon; Barra, Patricio Javier; Carrion, Victor J; de la Mora, Maria Luz; Pozo, Maria Jose

Microbial community composition in take-all suppressive soils Journal Article

In: Frontiers in microbiology, vol. 9, pp. 2198, 2018.

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35.

Carrion, Victor J; others,

Going back to the Roots: Impact of the microbiome on plant health and growth Journal Article

In: 2018.

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36.

Carrion, Victor; Raaijmakers, Jos

Unravelling the soil immune response Proceedings Article

In: International Congress of Plant Pathology (ICPP) 2018: Plant Health in A Global Economy, APSNET 2018.

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37.

CARRION, VJ; PeREZ-JARAMILLO, J; CORDOVEZ, V; de HOLLANDER, M; TRACANNA, V; MENDES, LW; MENDES, R; MEDEMA, MH; RAAIJMAKERS, JM

Mining of the endophytic microbiome for novel biosynthetic genes and antifungal metabolites. Proceedings Article

In: Embrapa Meio Ambiente-Resumo em anais de congresso (ALICE), In: PLANT MICROBIOME SYMPOSIUM, 2., 2018, Amsterdam.[Abstracts…] Amsterdam~… 2018.

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38.

Perez-Jaramillo, JE; Carrion, VJ; de HOLLANDER, M; Mendes, R; Raaijmakers, JM

The spermosphere effect: building up plant microbiome assembly. Proceedings Article

In: Embrapa Meio Ambiente-Resumo em anais de congresso (ALICE), In: CONGRESS OF EUROPEAN MICROBIOLOGISTS-FEMS, 7., 2017, Valencia, Spain~… 2018.

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39.

Perez-Jaramillo, JE; Carrion, VJ; de Hollander, M; Raaijmakers, JM

The wild side of plant microbiomes. Microbiome 6: 143 Miscellaneous

2018.

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2017

40.

Perez-Jaramillo, Juan E; Carrion, Victor J; Bosse, Mirte; Ferrao, Luiz FV; de Hollander, Mattias; Garcia, Antonio AF; Ramirez, Camilo A; Mendes, Rodrigo; Raaijmakers, Jos M

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits Journal Article

In: The ISME journal, vol. 11, no. 10, pp. 2244–2257, 2017.

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41.

Cordovez, Viviane; Mommer, Liesje; Moisan, Kay; Lucas-Barbosa, Dani; Pierik, Ronald; Mumm, Roland; Carrion, Victor J; Raaijmakers, Jos M

Plant phenotypic and transcriptional changes induced by volatiles from the fungal root pathogen Rhizoctonia solani Journal Article

In: Frontiers in plant science, vol. 8, pp. 1262, 2017.

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42.

Duran, Paola; Jorquera, Milko; Viscardi, Sharon; Carrion, Victor J; de la Mora, Maria Luz; Pozo, Maria J

Screening and characterization of potentially suppressive soils against Gaeumannomyces graminis under extensive wheat cropping by Chilean indigenous communities Journal Article

In: Frontiers in Microbiology, vol. 8, pp. 1552, 2017.

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2016

43.

Nguyen, Don D; Melnik, Alexey V; Koyama, Nobuhiro; Lu, Xiaowen; Schorn, Michelle; Fang, Jinshu; Aguinaldo, Kristen; Lincecum, Tommie L; Ghequire, Maarten GK; Carrion, Victor J; others,

Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides Journal Article

In: Nature microbiology, vol. 2, no. 1, pp. 1–10, 2016.

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44.

Cordovez, Viviane; Mommer, Liesje; Moisan, Kay; Lucas-Barbosa, Dani; Pierik, Ronald; Mumm, Roland; Carrion, Victor J; Raaijmakers, Jos M

Volatiles from a soil-borne pathogenic fungus modulate the trade-off between plant growth and insect resistance Journal Article

In: Volatile-mediated interactions in the rhizosphere, pp. 111–155, 2016.

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2015

45.

Arrebola, Eva; Carrion, Victor J; Gutierrez-Barranquero, Jose Antonio; Perez-Garcia, Alejandro; Rodriguez-Palenzuela, Pablo; Cazorla, Francisco M; de Vicente, Antonio

Cellulose production in Pseudomonas syringae pv. syringae: a compromise between epiphytic and pathogenic lifestyles Journal Article

In: FEMS microbiology ecology, vol. 91, no. 7, pp. fiv071, 2015.

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46.

Cordovez, Viviane; Carrion, Victor J; Etalo, Desalegn W; Mumm, Roland; Zhu, Hua; Wezel, Gilles P Van; Raaijmakers, Jos M

Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil Journal Article

In: Frontiers in microbiology, vol. 6, pp. 1081, 2015.

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47.

Martinez-Garcia, Pedro Manuel; Rodriguez-Palenzuela, Pablo; Arrebola, Eva; Carrion, Victor J; Gutierrez-Barranquero, Jose Antonio; Perez-Garcia, Alejandro; Ramos, Cayo; Cazorla, Francisco M; de Vicente, Antonio

Bioinformatics analysis of the complete genome sequence of the mango tree pathogen Pseudomonas syringae pv. syringae UMAF0158 reveals traits relevant to virulence and epiphytic lifestyle Journal Article

In: PloS one, vol. 10, no. 8, pp. e0136101, 2015.

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2014

48.

Carrion, Victor J; van der Voort, Menno; Arrebola, Eva; Gutierrez-Barranquero, Jose A; de Vicente, Antonio; Raaijmakers, Jos M; Cazorla, Francisco M

Mangotoxin production of Pseudomonas syringae pv. syringae is regulated by MgoA Journal Article

In: BMC microbiology, vol. 14, no. 1, pp. 1–13, 2014.

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49.

Calderon, Claudia E; Carrion, Victor J; de Vicente, Antonio; Cazorla, Francisco M

darR and darS are regulatory genes that modulate 2-hexyl, 5-propyl resorcinol transcription in Pseudomonas chlororaphis PCL1606 Journal Article

In: Microbiology, vol. 160, no. 12, pp. 2670–2680, 2014.

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2013

50.

Carrion, Victor J; Gutierrez-Barranquero, Jose A; Arrebola, Eva; Bardaji, Leire; Codina, Juan C; de Vicente, Antonio; Cazorla, Francisco M; Murillo, Jesus

The mangotoxin biosynthetic operon (mbo) is specifically distributed within Pseudomonas syringae genomospecies 1 and was acquired only once during evolution Journal Article

In: Applied and environmental microbiology, vol. 79, no. 3, pp. 756–767, 2013.

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57 entries « 1 of 2 »