Publications

@article{pan2023importance,

title = {Importance of Bacteroidetes in host–microbe interactions and ecosystem functioning},

author = {Xinya Pan and Jos M Raaijmakers and Víctor J Carrión},

year  = {2023},

date = {2023-01-01},

journal = {Trends in Microbiology},

publisher = {Elsevier},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{li2023acidification,

title = {Acidification suppresses the natural capacity of soil microbiome to fight pathogenic Fusarium infections},

author = {Xiaogang Li and Dele Chen and Víctor J Carrión and Daniel Revillini and Shan Yin and Yuanhua Dong and Taolin Zhang and Xingxiang Wang and Manuel Delgado-Baquerizo},

year  = {2023},

date = {2023-01-01},

journal = {Nature Communications},

volume = {14},

number = {1},

pages = {5090},

publisher = {Nature Publishing Group UK London},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{mendes2023impact,

title = {Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome},

author = {Lucas William Mendes and Jos M Raaijmakers and Mattias Hollander and Edis Sepo and Ruth Gómez Expósito and Alisson Fernando Chiorato and Rodrigo Mendes and Siu Mui Tsai and Victor J Carrión},

year  = {2023},

date = {2023-01-01},

journal = {Environmental Microbiome},

volume = {18},

number = {1},

pages = {68},

publisher = {Springer},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{rodriguez2023microbiome,

title = {Microbiome engineering optimized by Antarctic microbiota to support a plant host under water deficit},

author = {Rodrigo Rodríguez and Patricio J Barra and Giovanni Larama and Víctor J Carrion and María Luz Mora and Lauren Hale and Paola Duran},

year  = {2023},

date = {2023-01-01},

journal = {Frontiers in Plant Science},

volume = {14},

publisher = {Frontiers Media SA},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{noordijk2023baseless,

title = {baseLess: lightweight detection of sequences in raw MinION data},

author = {Ben Noordijk and Reindert Nijland and Victor J Carrion and Jos M Raaijmakers and Dick De Ridder and Carlos De Lannoy},

year  = {2023},

date = {2023-01-01},

journal = {Bioinformatics Advances},

volume = {3},

number = {1},

pages = {vbad017},

publisher = {Oxford University Press},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{terlouw2023mibig,

title = {MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters},

author = {Barbara R Terlouw and Kai Blin and Jorge C Navarro-Munoz and Nicole E Avalon and Marc G Chevrette and Susan Egbert and Sanghoon Lee and David Meijer and Michael JJ Recchia and Zachary L Reitz and others},

year  = {2023},

date = {2023-01-01},

journal = {Nucleic acids research},

volume = {51},

number = {D1},

pages = {D603–D610},

publisher = {Oxford University Press},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{li2023conifer,

title = {Conifer and broadleaf trees show a strong co-evolution with rhizosphere diazotrophic microbiome},

author = {Xiaogang Li and Haiyun Zi and Victor J Carrion and Hongguang Zhu and Yangwenke Liao and Shucun Sun},

year  = {2023},

date = {2023-01-01},

journal = {Plant and Soil},

volume = {484},

number = {1-2},

pages = {487–501},

publisher = {Springer},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{carrion2023unlocking,

title = {Unlocking the secrets of plant microbiomes.},

author = {Víctor José Carrión Bravo and others},

year  = {2023},

date = {2023-01-01},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{van2022ubiquitous,

title = {The ubiquitous catechol moiety elicits siderophore and angucycline production in Streptomyces},

author = {Doris A Bergeijk and Somayah S Elsayed and Chao Du and Isabel Nu nez Santiago and Anna M Roseboom and Le Zhang and Victor J Carrión and Herman P Spaink and Gilles P Wezel},

year  = {2022},

date = {2022-01-01},

journal = {Communications Chemistry},

volume = {5},

number = {1},

pages = {1--12},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{chen2022acidic,

title = {Acidic amelioration of soil amendments improves soil health by impacting rhizosphere microbial assemblies},

author = {Dele Chen and Xingxiang Wang and V'ictor J Carrión and Shan Yin and Zhengfu Yue and Yangwenke Liao and Yuanhua Dong and Xiaogang Li},

year  = {2022},

date = {2022-01-01},

journal = {Soil Biology and Biochemistry},

pages = {108599},

publisher = {Pergamon},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{cordovez2021successive,

title = {Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome},

author = {Viviane Cordovez and Cristina Rotoni and Francisco Dini-Andreote and Ben Oyserman and Victor J Carrion and Jos M Raaijmakers},

year  = {2021},

date = {2021-01-01},

journal = {Science of the Total Environment},

volume = {772},

pages = {144825},

publisher = {Elsevier},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{du2021nucleoid,

title = {The nucleoid-associated protein Gbn binds to GATC sequences and affects sporulation and antibiotic production in Streptomyces},

author = {Chao Du and Joost Willemse and Victor J Carrion and Armanda M Erkelens and Gilles P van Wezel and Remus T Dame},

year  = {2021},

date = {2021-01-01},

journal = {bioRxiv},

publisher = {Cold Spring Harbor Laboratory},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{schorn2021community,

title = {A community resource for paired genomic and metabolomic data mining},

author = {Michelle A Schorn and Stefan Verhoeven and Lars Ridder and Florian Huber and Deepa D Acharya and Alexander A Aksenov and Gajender Aleti and Jamshid Amiri Moghaddam and Allegra T Aron and Saefuddin Aziz and others},

url = {https://www.sciencedirect.com/science/article/pii/S0048969720383583},

year  = {2021},

date = {2021-01-01},

journal = {Nature chemical biology},

volume = {17},

number = {4},

pages = {363--368},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{zhang2021alternative,

title = {An Alternative and Conserved Cell Wall Enzyme That Can Substitute for the Lipid II Synthase MurG},

author = {L Zhang and K Ramijan and VJ Carrion and LT van der Aart and J Willemse and GP van Wezel and D Claessen},

year  = {2021},

date = {2021-01-01},

journal = {Mbio},

volume = {12},

number = {2},

publisher = {American Society for Microbiology},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{du2021nucleoidb,

title = {The nucleoid-associated protein Gbn binds to GATC sequences and affects sporulation and antibiotic production in Streptomyces},

author = {Chao Du and Joost Willemse and Amanda M Erkelens and Victor J Carrion and Remus T Dame and Gilles P Wezel},

year  = {2021},

date = {2021-01-01},

journal = {bioRxiv},

publisher = {Cold Spring Harbor Laboratory},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{schorn2021communityb,

title = {A community resource for paired genomic and metabolomic data mining},

author = {Michelle A Schorn and Stefan Verhoeven and Lars Ridder and Florian Huber and Deepa D Acharya and Alexander A Aksenov and Gajender Aleti and Jamshid Amiri Moghaddam and Allegra T Aron and Saefuddin Aziz and others},

year  = {2021},

date = {2021-01-01},

journal = {Nature Chemical Biology},

volume = {17},

number = {4},

pages = {363--368},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{zhang2021alternativeb,

title = {An Alternative and Conserved Cell Wall Enzyme That Can Substitute for the Lipid II Synthase MurG},

author = {L Zhang and K Ramijan and VJ Carrión and LT Aart and J Willemse and GP Wezel and D Claessen},

year  = {2021},

date = {2021-01-01},

journal = {Mbio},

volume = {12},

number = {2},

pages = {e03381--20},

publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{gv2021adrenaline,

title = {Adrenaline-mediated activation of antibiotic production in Streptomyces highlights catechol as elicitor of specialized metabolism},

author = {Wezel Gv and Bergeijk Dv and S Elsayed and C Du and IN Santiago and A Roseboom and L Zhang and V Carrion and H Spaink},

year  = {2021},

date = {2021-01-01},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{van2021adrenaline,

title = {Adrenaline-mediated activation of antibiotic production in Streptomyces highlights catechol as elicitor of specialized metabolism},

author = {Gilles Wezel and Doris Bergeijk and Somayah Elsayed and Chao Du and Isabel Nunez Santiago and Anna Roseboom and Le Zhang and Victor Carrion and Herman Spaink},

year  = {2021},

date = {2021-01-01},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{sieber2021mitigation,

title = {Mitigation of Pseudomonas syringae virulence by signal inactivation},

author = {Simon Sieber and Anugraha Mathew and Christian Jenul and Tobias Kohler and Max Bär and V'ictor J Carrión and Francisco M Cazorla and Urs Stalder and Ya-Chu Hsieh and Laurent Bigler and others},

year  = {2021},

date = {2021-01-01},

journal = {Science advances},

volume = {7},

number = {37},

pages = {eabg2293},

publisher = {American Association for the Advancement of Science},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{oyserman2021disentangling,

title = {Disentangling the genetic basis of rhizosphere microbiome assembly in tomato},

author = {Ben O Oyserman and Stalin Sarango Flores and Thom Griffioen and Elmar Wijk and Lotte Pronk and Wouter Lokhorst and Azkia Nurfikari and Nejc Stopnisek and Anne Kupczok and Viviane Cordovez and others},

year  = {2021},

date = {2021-01-01},

journal = {bioRxiv},

publisher = {Cold Spring Harbor Laboratory},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{contreras2020consecutive,

title = {Consecutive lactate formation and chain elongation to reduce exogenous chemicals input in repeated-batch food waste fermentation},

author = {Carlos A Contreras-Davila and Victor J Carrion and Vincent R Vonk and Cees NJ Buisman and David PBTB Strik},

year  = {2020},

date = {2020-01-01},

journal = {Water research},

volume = {169},

pages = {115215},

publisher = {Pergamon},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{elsayed2020atypical,

title = {Atypical Spirotetronate Polyketides Identified in the Underexplored Genus Streptacidiphilus},

author = {Somayah S Elsayed and Gregory Genta-Jouve and Victor J Carrion and Peter H Nibbering and Maxime A Siegler and Wietse De Boer and Thomas Hankemeier and Gilles P Van Wezel},

year  = {2020},

date = {2020-01-01},

journal = {The Journal of organic chemistry},

volume = {85},

number = {16},

pages = {10648--10657},

publisher = {American Chemical Society},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{song2020beyond,

title = {Beyond plant microbiome composition: exploiting microbial functions and plant traits via integrated approaches},

author = {Chunxu Song and Feng Zhu and Victor J Carrion and Viviane Cordovez},

year  = {2020},

date = {2020-01-01},

journal = {Frontiers in bioengineering and biotechnology},

volume = {8},

pages = {896},

publisher = {Frontiers},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{sieber2020volatile,

title = {A Volatile Signal Controls Virulence in the Plant Pathogen Pseudomonas syringae pv. syringae and a Strategy for Infection Control in Organic Farming},

author = {Simon Sieber and Anugraha Mathew and Christian Jenul and Tobias Kohler and Max Bar and Victor J Carrion and Francisco M Cazorla and Urs Stalder and Ya-Chu Hsieh and Laurent Bigler and others},

year  = {2020},

date = {2020-01-01},

journal = {bioRxiv},

publisher = {Cold Spring Harbor Laboratory},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{zhang2020novel,

title = {A novel and conserved cell wall enzyme that can substitute for the Lipid II synthase MurG},

author = {Le Zhang and Karina Ramijan and Victor Carrion and Lizah van der Aart and Joost Willemse and Gilles Van Wezel and Dennis Claessen},

year  = {2020},

date = {2020-01-01},

journal = {bioRxiv},

publisher = {Cold Spring Harbor Laboratory},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{li2019legacy,

title = {Legacy of land use history determines reprogramming of plant physiology by soil microbiome},

author = {Xiaogang Li and Alexandre Jousset and Wietse de Boer and Victor J Carrion and Taolin Zhang and Xingxiang Wang and Eiko E Kuramae},

year  = {2019},

date = {2019-01-01},

journal = {The ISME journal},

volume = {13},

number = {3},

pages = {738--751},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{cordovez2019ecology,

title = {Ecology and evolution of plant microbiomes},

author = {Viviane Cordovez and Francisco Dini-Andreote and Victor J Carrion and Jos M Raaijmakers},

year  = {2019},

date = {2019-01-01},

journal = {Annual review of microbiology},

volume = {73},

pages = {69--88},

publisher = {Annual Reviews},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{perez2019deciphering,

title = {Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia},

author = {Juan E Perez-Jaramillo and Mattias de Hollander and Camilo A Ramirez and Rodrigo Mendes and Jos M Raaijmakers and Victor J Carrion},

year  = {2019},

date = {2019-01-01},

journal = {Microbiome},

volume = {7},

number = {1},

pages = {1--16},

publisher = {BioMed Central},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{carrion2019pathogen,

title = {Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome},

author = {Victor J Carrion and Juan Perez-Jaramillo and Viviane Cordovez and Vittorio Tracanna and Mattias De Hollander and Daniel Ruiz-Buck and Lucas W Mendes and Wilfred FJ Van Ijcken and Ruth Gomez-Exposito and Somayah S Elsayed and others},

year  = {2019},

date = {2019-01-01},

journal = {Science},

volume = {366},

number = {6465},

pages = {606--612},

publisher = {American Association for the Advancement of Science},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{carrion2018involvement,

title = {Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils},

author = {Victor J Carrion and Viviane Cordovez and Olaf Tyc and Desalegn W Etalo and Irene de Bruijn and Victor CL de Jager and Marnix H Medema and Leo Eberl and Jos M Raaijmakers},

year  = {2018},

date = {2018-01-01},

journal = {The ISME journal},

volume = {12},

number = {9},

pages = {2307--2321},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{perez2018wild,

title = {The wild side of plant microbiomes},

author = {Juan E Perez-Jaramillo and Victor J Carrion and Mattias de Hollander and Jos M Raaijmakers},

year  = {2018},

date = {2018-01-01},

journal = {Microbiome},

volume = {6},

number = {1},

pages = {1--6},

publisher = {BioMed Central},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{cordovez2018priming,

title = {Priming of plant growth promotion by volatiles of root-associated Microbacterium spp.},

author = {Viviane Cordovez and Sharella Schop and Kees Hordijk and Herve Dupre de Boulois and Filip Coppens and Inge Hanssen and Jos M Raaijmakers and Victor J Carrion},

year  = {2018},

date = {2018-01-01},

journal = {Applied and environmental microbiology},

volume = {84},

number = {22},

publisher = {American Society for Microbiology},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{duran2018microbial,

title = {Microbial community composition in take-all suppressive soils},

author = {Paola Duran and Gonzalo Tortella and Sharon Viscardi and Patricio Javier Barra and Victor J Carrion and Maria Luz de la Mora and Maria Jose Pozo},

year  = {2018},

date = {2018-01-01},

journal = {Frontiers in microbiology},

volume = {9},

pages = {2198},

publisher = {Frontiers},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{carrion2018going,

title = {Going back to the Roots: Impact of the microbiome on plant health and growth},

author = {Victor J Carrion and others},

year  = {2018},

date = {2018-01-01},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{perez2017linking,

title = {Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits},

author = {Juan E Perez-Jaramillo and Victor J Carrion and Mirte Bosse and Luiz FV Ferrao and Mattias de Hollander and Antonio AF Garcia and Camilo A Ramirez and Rodrigo Mendes and Jos M Raaijmakers},

year  = {2017},

date = {2017-01-01},

journal = {The ISME journal},

volume = {11},

number = {10},

pages = {2244--2257},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{cordovez2017plant,

title = {Plant phenotypic and transcriptional changes induced by volatiles from the fungal root pathogen Rhizoctonia solani},

author = {Viviane Cordovez and Liesje Mommer and Kay Moisan and Dani Lucas-Barbosa and Ronald Pierik and Roland Mumm and Victor J Carrion and Jos M Raaijmakers},

year  = {2017},

date = {2017-01-01},

journal = {Frontiers in plant science},

volume = {8},

pages = {1262},

publisher = {Frontiers},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{duran2017screening,

title = {Screening and characterization of potentially suppressive soils against Gaeumannomyces graminis under extensive wheat cropping by Chilean indigenous communities},

author = {Paola Duran and Milko Jorquera and Sharon Viscardi and Victor J Carrion and Maria Luz de la Mora and Maria J Pozo},

year  = {2017},

date = {2017-01-01},

journal = {Frontiers in Microbiology},

volume = {8},

pages = {1552},

publisher = {Frontiers},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{nguyen2016indexing,

title = {Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides},

author = {Don D Nguyen and Alexey V Melnik and Nobuhiro Koyama and Xiaowen Lu and Michelle Schorn and Jinshu Fang and Kristen Aguinaldo and Tommie L Lincecum and Maarten GK Ghequire and Victor J Carrion and others},

year  = {2016},

date = {2016-01-01},

journal = {Nature microbiology},

volume = {2},

number = {1},

pages = {1--10},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{cordovez2016volatiles,

title = {Volatiles from a soil-borne pathogenic fungus modulate the trade-off between plant growth and insect resistance},

author = {Viviane Cordovez and Liesje Mommer and Kay Moisan and Dani Lucas-Barbosa and Ronald Pierik and Roland Mumm and Victor J Carrion and Jos M Raaijmakers},

year  = {2016},

date = {2016-01-01},

journal = {Volatile-mediated interactions in the rhizosphere},

pages = {111--155},

publisher = {University of Zurich, Switzerland},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{arrebola2015cellulose,

title = {Cellulose production in Pseudomonas syringae pv. syringae: a compromise between epiphytic and pathogenic lifestyles},

author = {Eva Arrebola and Victor J Carrion and Jose Antonio Gutierrez-Barranquero and Alejandro Perez-Garcia and Pablo Rodriguez-Palenzuela and Francisco M Cazorla and Antonio de Vicente},

year  = {2015},

date = {2015-01-01},

journal = {FEMS microbiology ecology},

volume = {91},

number = {7},

pages = {fiv071},

publisher = {Oxford University Press},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{cordovez2015diversity,

title = {Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil},

author = {Viviane Cordovez and Victor J Carrion and Desalegn W Etalo and Roland Mumm and Hua Zhu and Gilles P Van Wezel and Jos M Raaijmakers},

year  = {2015},

date = {2015-01-01},

journal = {Frontiers in microbiology},

volume = {6},

pages = {1081},

publisher = {Frontiers},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{martinez2015bioinformatics,

title = {Bioinformatics analysis of the complete genome sequence of the mango tree pathogen Pseudomonas syringae pv. syringae UMAF0158 reveals traits relevant to virulence and epiphytic lifestyle},

author = {Pedro Manuel Martinez-Garcia and Pablo Rodriguez-Palenzuela and Eva Arrebola and Victor J Carrion and Jose Antonio Gutierrez-Barranquero and Alejandro Perez-Garcia and Cayo Ramos and Francisco M Cazorla and Antonio de Vicente},

year  = {2015},

date = {2015-01-01},

journal = {PloS one},

volume = {10},

number = {8},

pages = {e0136101},

publisher = {Public Library of Science},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{carrion2014mangotoxin,

title = {Mangotoxin production of Pseudomonas syringae pv. syringae is regulated by MgoA},

author = {Victor J Carrion and Menno van der Voort and Eva Arrebola and Jose A Gutierrez-Barranquero and Antonio de Vicente and Jos M Raaijmakers and Francisco M Cazorla},

year  = {2014},

date = {2014-01-01},

journal = {BMC microbiology},

volume = {14},

number = {1},

pages = {1--13},

publisher = {BioMed Central},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{calderon2014darr,

title = {darR and darS are regulatory genes that modulate 2-hexyl, 5-propyl resorcinol transcription in Pseudomonas chlororaphis PCL1606},

author = {Claudia E Calderon and Victor J Carrion and Antonio de Vicente and Francisco M Cazorla},

year  = {2014},

date = {2014-01-01},

journal = {Microbiology},

volume = {160},

number = {12},

pages = {2670--2680},

publisher = {Microbiology Society},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{carrion2013mangotoxin,

title = {The mangotoxin biosynthetic operon (mbo) is specifically distributed within Pseudomonas syringae genomospecies 1 and was acquired only once during evolution},

author = {Victor J Carrion and Jose A Gutierrez-Barranquero and Eva Arrebola and Leire Bardaji and Juan C Codina and Antonio de Vicente and Francisco M Cazorla and Jesus Murillo},

year  = {2013},

date = {2013-01-01},

journal = {Applied and environmental microbiology},

volume = {79},

number = {3},

pages = {756--767},

publisher = {American Society for Microbiology},

keywords = {},

pubstate = {published},

tppubtype = {article}

}